PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019655m
Common NameEUTSA_v10019655mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SRS
Protein Properties Length: 346aa    MW: 38285.7 Da    PI: 6.7426
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019655mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.62.3e-701192862154
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrel....... 78 
                      r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+          +        e        
  Thhalv10019655m 119 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRetqnanakrvR--------EAnggendd 204
                      7899*******************************************************999988866444444441........445555555 PP

           DUF702  79 ...kskkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                         +s   +al+ t++++a+s+  le s+ lP+evss+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG++e
  Thhalv10019655m 205 kdhSSGGGTALAITRVVNANSNPGLELSQnLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDE 286
                      5548888999***********999998766*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.7E-65122285IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28124166IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-26235284IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHQQQD KSNNYLYLYK DEIYNNNKGF EIWPPQYFQQ  60
QQQHVSAPAN FYSFGMVPSG SSSNNNNNNN NNNNNNNRSR SLYFNVVSDH EPGGFTVTRQ  120
GGMNCQDCGN QAKKDCPHMR CRTCCKSRGF HCQTHVKSTW VPAAKRRERL AQLASLQHHS  180
ASSRETQNAN AKRVREANGG ENDDKDHSSG GGTALAITRV VNANSNPGLE LSQNLPPEVS  240
SPAVFRCVRV SSIEEDEDDQ EYAYQTAVNI GGHVFKGILY DQGPDEDHQL NLLASTATTT  300
NAEETAAKTA VTVAGNNNNG LILDPSSLYP AQLNSFIAGT PFFTPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390296.10.0hypothetical protein EUTSA_v10019655mg, partial
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLV4KCT50.0V4KCT5_EUTSA; Uncharacterized protein (Fragment)
STRINGAT1G75520.10.0(Arabidopsis thaliana)
STRINGfgenesh2_kg.2__1830__AT1G75520.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-165SHI-related sequence 5